Lifeboat Foundation

Circa 2012 One day ice from could be transformed to metal the be transported anywhere even into space.

Researchers have combined high-powered computing and ‘chemical intuition’ to discover new phases of ice at extremely high pressures nonexistent on Earth, but probably abundant elsewhere in the solar system. (Jan. 16, 2012)

Recently, we found dramatic mitochondrial DNA divergence of Israeli Chamaeleo chamaeleon populations into two geographically distinct groups. We aimed to examine whether the same pattern of divergence could be found in nuclear genes. However, no genomic resource is available for any chameleon species. Here we present the first chameleon transcriptome, obtained using deep sequencing (SOLiD). Our analysis identified 164000 sequence contigs of which 19000 yielded unique BlastX hits. To test the efficacy of our sequencing effort, we examined whether the chameleon and other available reptilian transcriptomes harbored complete sets of genes comprising known biochemical pathways, focusing on the nDNA-encoded oxidative phosphorylation (OXPHOS) genes as a model. As a reference for the screen, we used the human 86 (including isoforms) known structural nDNA-encoded OXPHOS subunits. Analysis of 34 publicly available vertebrate transcriptomes revealed orthologs for most human OXPHOS genes. However, OXPHOS subunit COX8 (Cytochrome C oxidase subunit 8), including all its known isoforms, was consistently absent in transcriptomes of iguanian lizards, implying loss of this subunit during the radiation of this suborder. The lack of COX8 in the suborder Iguania is intriguing, since it is important for cellular respiration and ATP production. Our sequencing effort added a new resource for comparative genomic studies, and shed new light on the evolutionary dynamics of the OXPHOS system.

Keywords: chameleon, oxidative phosphorylation, transcriptome.

Massive parallel sequencing (MPS) enables identifying the entire set of transcribed genes (transcriptome) of understudied organisms, thus providing novel genomic resources. However, because there is no genomic reference to those organisms, the short reads generated by MPS must be de novo assembled in order to form sequence contigs, which in turn could be annotated (Kusumi et al. 2011), thus creating reference sequences for further analyses.

The compounds can form PFAS, also known as “forever chemicals,” which have been linked to cancer and birth defects. The E.P.A. approvals came despite the agency’s own concerns about toxicity.

Most plastic persists in the environment. A recently developed polymer degrades in a week and doesn’t leave microplastics behind. Image credit: Larina Marina/ Shutterstock.

Plastic trash chokes shorelines and oceans, in part because plastic polymers do not easily decompose. But a new kind of environmentally degradable plastic could help change that: It breaks down in about a week in sunlight and air, according to a recent study in the Journal of the American Chemical Society (JACS). Chemical characterization using nuclear magnetic resonance (NMR) and mass spectroscopy, among other techniques, revealed that the plastic decomposed rapidly in sunlight from a petroleum-based polymer into succinic acid, a naturally occurring nontoxic small molecule that doesn’t leave microplastic fragments in the environment.

Although a sun-sensitive plastic might not be a good choice for bottles or bags that need to last more than a week on shelves, integrating the environmentally degradable polymer as a minor ingredient, or with other biodegradable polymers, could help speed breakdown of these materials in landfills, says coauthor Liang Luo, an organic materials scientist at Huazhong University of Science and Technology in Wuhan, China. The flexible and degradable material would be potentially useful inside electronics, he says. Sealed inside a cell phone or other flexible electronic device, the polymer could last for years isolated from light and oxygen, Luo notes, while making smartphones easier to dispose of at the end of their service life. And the byproduct succinic acid could be upcycled for commercial uses in the pharmaceutical and food industries, Luo adds.

Data collected can be used to provide new insights into the evolution of the Kuiper Belt, and the larger solar system.

Trans-Neptunian Objects (TNOs), small objects that orbit the sun beyond Neptune, are fossils from the early days of the solar system which can tell us a lot about its formation and evolution.

A new study led by Mohamad Ali-Dib, a research scientist at the NYU Abu Dhabi Center for Astro, Particle, and Planetary Physics, reports the significant discovery that two groups of TNOs with different surface colors also have very different orbital patterns. This new information can be compared to models of the solar system to provide fresh insights into its early chemistry. Additionally, this discovery paves the way for further understanding of the formation of the Kuiper Belt itself, an area beyond Neptune comprised of icy objects, that is also the source of some comets.

Planets which are tilted on their axis, like Earth, are more capable of evolving complex life. This finding will help scientists refine the search for more advanced life on exoplanets. This NASA-funded research is presented at the Goldschmidt Geochemistry Conference.

Since the first discovery of exoplanets (planets orbiting distant stars) in 1992, scientists have been looking for worlds that might support life. It is believed that to sustain even basic life, exoplanets need to be at just the right distance from their stars to allow liquid water to exist; the so-called “Goldilocks zone.” However, for more advanced life, other factors are also important, particularly atmospheric oxygen.

Oxygen plays a critical role in respiration, the chemical process which drives the metabolisms of most complex living things. Some basic life forms produce oxygen in small quantities, but for more complex life forms, such as plants and animals, oxygen is critical. Early Earth had little oxygen even though basic life forms existed.

Ageing is an incredibly complicated process, so much so that we do not yet understand exactly how complicated it is. It is in fact so complicated, that it could actually be incredibly simple. Confused? Well, imagine if you were a structural engineer who was trying to understand why a building collapsed. From an initial inspection of the rubble, it may be extremely difficult to work out exactly what went wrong. Was the building made from inferior materials? Was it built incorrectly? Was its destruction deliberate? Did it just fall apart due to age? All of these are possible, but what was the true cause for its destruction? Well, that is the same mystery we are trying to solve in longevity research. We can see the damage that is caused by ageing, but what is the cause? Is it a general accumulation of damage, or are there single points of failure which have knock on effects that affect the entire body? A cascade failure if you will.

Of the many different changes that occur during the ageing process, one of the most well-known and understood is the decreased capacity for our body to produced chemical energy, which has a knock-on effect throughout the body. This results in a general decrease in our ability to carry out cellular functions and will therefore effective everything from muscle strength to DNA replication and repair. This decrease in energy output has been linked to defects in our mitochondria, but in addition to these physical defects that occur in these small organisms, we now know that they also suffer a decreased capacity to carry out their function due to lacking a critical coenzyme called Nicotinamide adenine dinucleotide (NAD). Anyone who has taken a high school level biology class will probably recognise this enzyme as part of the electron transport chain in respiration.

A unique study of ancient diamonds has shown that the basic chemical composition of the Earth’s atmosphere which makes it suitable for life’s explosion of diversity was laid down at least 2.7 billion years ago. Volatile gases conserved in diamonds found in ancient rocks were present in similar proportions to those found in today’s mantle, which in turn indicates that there has been no fundamental change in the proportions of volatiles in the atmosphere over the last few billion years. This shows that one of the basic conditions necessary to support life, the presence of life-giving elements in sufficient quantity, appeared soon after Earth formed, and has remained fairly constant ever since.

Presenting the work at the Goldschmidt Geochemistry Conference, lead researcher Dr. Michael Broadly said, “The proportion and make-up of volatiles in the atmosphere reflects that found in the mantle, and we have no evidence of a significant change since these diamonds were formed 2.7 billion years ago.”

Volatiles, such as hydrogen, nitrogen, neon, and carbon-bearing species are light chemical elements and compounds, which can be readily vaporized due to heat, or pressure changes. They are necessary for life, especially carbon and nitrogen. Not all planets are rich in volatiles; Earth is volatile-rich, as is Venus, but Mars and the Moon lost most of their volatiles into space. Generally, a planet rich in volatiles has a better chance of sustaining life, which is why much of the search for life on planets surrounding distant stars (exoplanets) has focused on looking for volatiles.

An unknown methane-producing process is likely at work in the hidden ocean beneath the icy shell of Saturn’s moon Enceladus, suggests a new study published in Nature Astronomy by scientists at the University of Arizona and Paris Sciences & Lettres University.

Giant water plumes erupting from Enceladus have long fascinated scientists and the public alike, inspiring research and speculation about the vast ocean that is believed to be sandwiched between the moon’s rocky core and its icy shell. Flying through the plumes and sampling their chemical makeup, the Cassini spacecraft detected a relatively high concentration of certain molecules associated with hydrothermal vents on the bottom of Earth’s oceans, specifically dihydrogen, methane and carbon dioxide. The amount of methane found in the plumes was particularly unexpected.

“We wanted to know: Could Earthlike microbes that ‘eat’ the dihydrogen and produce methane explain the surprisingly large amount of methane detected by Cassini?” said Régis Ferrière, an associate professor in the University of Arizona Department of Ecology and Evolutionary Biology and one of the study’s two lead authors. “Searching for such microbes, known as methanogens, at Enceladus’ seafloor would require extremely challenging deep-dive missions that are not in sight for several decades.”